Publications

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2009
Verspoor, K, Cohen KB, Hunter L.  2009.  The textual characteristics of traditional and Open Access scientific journals are similar. BMC bioinformatics. 10:183., Number 1: BioMed Central Ltd Abstract

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2008
Joslyn, C, Paulson P, Verspoor K.  2008.  Exploiting Term Relations for Semantic Hierarchy Construction. Semantic Computing, 2008 IEEE International Conference on. :42–49.: IEEE Abstract

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Joslyn, C, Gregory M, McGrath L, Paulson P, Verspoor K.  2008.  Semantic Hierarchies: Induction, Measurement, and Management. Abstract

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Lin, S, Verspoor K.  2008.  A semantics-enhanced language model for unsupervised word sense disambiguation. Computational Linguistics and Intelligent Text Processing. :287–298.: Springer Abstract

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Abi-Haidar, A, Kaur J, Maguitman A, Radivojac P, Rechtsteiner A, Verspoor K, Wang Z, Rocha LM.  2008.  Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks. Genome biology. 9:S11., Number Suppl 2: BioMed Central Ltd Abstract

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2007
Joslyn, CA, Verspoor KM, Gessler DDG.  2007.  Knowledge Integration in OpenWorlds: Utilizing the Mathematics of Hierarchical Structure. Semantic Computing, 2007. ICSC 2007. International Conference on. :105–112.: IEEE Abstract

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Abi-Haidar, A, Maguitman A, Kaur J, Radivojac P, Retchsteiner A, Verspoor K, Wang Z, Rocha L.  2007.  Uncovering protein-protein interactions in the bibliome. Proceedings of the Second BioCreative Challenge Evaluation Workshop, Volume ISBN 84-933255-6. 2:247–255. Abstract

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2006
Verspoor, K, Cohen KB, Goertzel B, Mani I.  2006.  BioNLP’06 Linking Natural Language Processing and Biology: Towards Deeper Biological Literature Analysis. Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and Biology. , New York, NY
Verspoor, K, Cohn J, Mniszewski S, Joslyn C.  2006.  A categorization approach to automated ontological function annotation. Protein Science. 15:1544–1549., Number 6: Wiley Online Library Abstract

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Gessler, DDG, Joslyn CA, Verspoor KM, Schmidt SE.  2006.  Deconstruction, Reconstruction, and Ontogenesis for Large, Monolithic, Legacy Ontologies in Semantic Web Service Applications. National Center for Genome Research. Abstract

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Verspoor, K, Sanfilippo A, Elmore M, MacKerrow E.  2006.  Deploying Natural Language Processing for Social Science Analysis. proceedings 2006 Chicago Colloquium on Digital Humanities and Computer Science. Abstract

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Joslyn, CA, Gessler DDG, Schmidt SE, Verspoor KM.  2006.  Distributed Representations of Bio-Ontologies for Semantic Web Services. Joint BioLINK and 9th Bio-Ontologies Meeting (JBB 06): 2006. Abstract

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Maguitman, AG, Rechtsteiner A, Verspoor K, Strauss C, Rocha LM.  2006.  Large-scale testing of Bibliome informatics using Pfam protein families. Pacific Symposium on Biocomputing. 11:76–87. Abstract

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2005
Verspoor, K, Cohn J, Mniszewski S, Joslyn C.  2005.  POSOLE: Automated Ontological Annotation for Function Prediction. Automated Function Prediction. 16:20., Number 1 Abstract

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Verspoor, K, Joslyn C, Cohn J, Mniszewski S, Rechtsteiner A, Simas T, Rocha L.  2005.  Protein annotation as term categorization in the gene ontology using word proximity networks. BMC bioinformatics. 6:S20., Number Suppl 1: BioMed Central Ltd Abstract

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Verspoor, K.  2005.  Towards a semantic lexicon for biological language processing. Comparative and functional genomics. 6:61–66., Number 1-2: Wiley Online Library Abstract
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2004
Verspoor, K, Cohn J, Joslyn C, Mniszewski S, Rechtsteiner A, Rocha LM, Simas T.  2004.  The LANL BioCreAtIvE submission. Abstract

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Verspoor, K, Cohn J, Mniszewski SM, Joslyn CA.  2004.  Nearest Neighbor Categorization for Function Prediction. Proc. 5th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP 05). Abstract

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2003
Verspoor, CM, Joslyn C, Papcun GJ.  2003.  The gene ontology as a source of lexical semantic knowledge for a biological natural language processing application. SIGIR workshop on Text Analysis and Search for Bioinformatics. :51–56. Abstractlaur_03-4480.pdf

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Verspoor, C, Joslyn C, Papcun G.  2003.  Interactions Between the Gene Ontology and a Domain Corpus for a Biological Natural Language Processing Application. proceedings Sixth Annual Bio-Ontologies Meeting. Abstract

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1998
Wan, S, Verspoor CM.  1998.  Automatic English-Chinese name transliteration for development of multilingual resources. Proceedings of the 36th Annual Meeting of the Association for Computational Linguistics and 17th International Conference on Computational Linguistics-Volume 2. :1352–1356.: Association for Computational Linguistics Abstract

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Dale, R, Green SJ, Milosavljevic M, Paris C, Williams S, Verspoor C.  1998.  Dynamic document delivery: Generating natural language texts on demand. Database and Expert Systems Applications, 1998. Proceedings. Ninth International Workshop on. :131–136.: IEEE Abstract

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Verspoor, C, Dale R, Green S, Milosavljevic M, Paris C, Williams S.  1998.  Intelligent Agents for Information Presentation: Dynamic Description of Knowledge Base Objects. the proceed. :75–86. Abstract

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Dale, R, Green SJ, Milosavljevic M, Paris C, Williams S, Verspoor C.  1998.  The realities of generating natural language from databases. Proceedings of the 11th Australian Joint Conference on Artificial Intelligence. :13–17. Abstract

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Verspoor, CM.  1998.  Predictivity vs. Stipulativity in the Lexicon. Language. 152:162. Abstract
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1997
Verspoor, CM.  1997.  Contextually-dependent lexical semantics. : University of Edinburgh. College of Science and Engineering. School of Informatics. Abstract
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Verspoor, C.  1997.  Conventionality-governed logical metonymy. Proc. of the 2nd International Workshop on Computational Semantics. :300–312. Abstract
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1996
Narasimhan, B, Di Tomaso V, Verspoor CM.  1996.  Unaccusative or Unergative? Verbs of Manner of Motion Quaderni del Laboratorio di Llinguistica. 10 Abstract

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Verspoor, C.  1996.  Lexical limits on the influence of context. Proc. of CogSci. :116–120. Abstract
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Verspoor, CM.  1996.  A perspective on PPs. Edinburgh Working Papers in Cognitive Science. :229. Abstract
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1994
Verspoor, CM.  1994.  A cognitively relevant lexical semantics. Master's thesis. Abstract
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