Publications

  • strict warning: Declaration of vsite::router() should be compatible with space_og::router($op, $object = NULL, $is_active = true) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 262.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Declaration of os_boxes_modal_siteinfo::config_path() should be compatible with os_boxes_modalframe::config_path($box) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/os/modules/os_modalframe/plugins/os_boxes_modal_siteinfo.inc on line 65.
  • strict warning: Declaration of os_boxes_modal_sitelogo::config_path() should be compatible with os_boxes_modalframe::config_path($box) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/os/modules/os_modalframe/plugins/os_boxes_modal_sitelogo.inc on line 56.
  • strict warning: Declaration of os_modal_wysiwyg::config_path() should be compatible with os_boxes_modalframe::config_path($box) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/os/modules/os_modalframe/plugins/os_modal_wysiwyg.inc on line 69.
  • strict warning: Declaration of os_modal_wysiwyg::submit() should be compatible with os_boxes_modalframe::submit($form, $form_state) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/os/modules/os_modalframe/plugins/os_modal_wysiwyg.inc on line 69.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Only variables should be passed by reference in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/wysiwyg_fields/includes/system.inc on line 11.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method view::load() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/views/views.module on line 879.
  • strict warning: Non-static method view::load() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/views/views.module on line 879.
  • strict warning: Non-static method view::load() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/views/views.module on line 879.
  • strict warning: Declaration of views_handler_argument::init() should be compatible with views_handler::init(&$view, $options) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/views/handlers/views_handler_argument.inc on line 745.
  • strict warning: Declaration of views_handler_filter::options_validate() should be compatible with views_handler::options_validate($form, &$form_state) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/views/handlers/views_handler_filter.inc on line 589.
  • strict warning: Declaration of views_handler_filter::options_submit() should be compatible with views_handler::options_submit($form, &$form_state) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/views/handlers/views_handler_filter.inc on line 589.
  • strict warning: Declaration of views_handler_filter_boolean_operator::value_validate() should be compatible with views_handler_filter::value_validate($form, &$form_state) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/views/handlers/views_handler_filter_boolean_operator.inc on line 149.
  • strict warning: Declaration of views_plugin_row::options_validate() should be compatible with views_plugin::options_validate(&$form, &$form_state) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/views/plugins/views_plugin_row.inc on line 135.
  • strict warning: Declaration of views_plugin_row::options_submit() should be compatible with views_plugin::options_submit(&$form, &$form_state) in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/views/plugins/views_plugin_row.inc on line 135.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
  • strict warning: Non-static method vsite::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 242.
  • strict warning: Non-static method space_og::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/openscholar_vsite/vsite/plugins/vsite.inc on line 218.
  • strict warning: Non-static method space_type_purl::excluded_paths() should not be called statically in /home/uceda/webapps/openscholar_php_5_2/sites/all/modules/contrib/spaces/spaces_og/plugins/space_og.inc on line 185.
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Radivojac, P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Mooney S, Friedberg I, et al.  2013.  A large-scale evaluation of computational protein function prediction. Nature Methods. advance online publication: Nature Publishing Group AbstractWebsite

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Ramakrishnan, C, Baumgartner Jr WA, Blake JA, Burns GAPC, Cohen KB, Drabkin H, Eppig J, Hovy E, Hsu CN, Hunter LE, Ingulfsen T, Pokkunuri S, Onda H, Riloff E, Roeder C, Verspoor K.  2010.  Building the Scientific Knowledge Mine (SciKnowMine): a Community-driven Framework for Text Mining Tools in Direct Service to Biocuration. Malta. Language Resources and Evaluation. Abstract

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Ravikumar, KE, Liu H, Cohn JD, Wall ME, Verspoor K.  2012.  Literature Mining of Protein-Residue Associations with Graph Rules Learned through Distant Supervision. Journal of Biomedical Semantics. 3(S3):S2.
Ravikumar, KE, Liu H, Cohn JD, Wall ME, Verspoor K.  2011.  Pattern Learning through Distant Supervision for Extraction of Protein-Residue Associations in the Biomedical Literature. Machine Learning and Applications and Workshops (ICMLA), 2011 10th International Conference on. 2:59–65.: IEEE Abstract

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Rimell, L, Lippincott T, Verspoor K, Johnson HL, Korhonen A.  2013.  Acquisition and evaluation of verb subcategorization resources for biomedicine. Journal of Biomedical Informatics. 46:228-237., Number 2 AbstractWebsite

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Roeder, C, Jonquet C, Shah NH, Baumgartner Jr WA, Verspoor K, Hunter L.  2010.  A UIMA wrapper for the NCBO annotator. Bioinformatics. 26:1800–1801., Number 14: Oxford Univ Press Abstract

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